#### For Bayesian phylogeny #### >>> PartitionFinder Best partitioning scheme Scheme Name : start_scheme Scheme lnL : -9486.20562744 Scheme AIC : 19168.4112549 Number of params : 98 Number of sites : 2680 Number of subsets : 6 Subset | Best Model | # sites | subset id | Partition names 1 | GTR+G | 831 | fead3db6af9045ed07f3be6b8f5a83c8 | 18S 2 | GTR+I | 725 | 47be53de1517dfe19f77e88d80e6f017 | 28S 3 | HKY+G | 220 | f5b7963dc00e832763c42ca8898f5103 | COI_pos2 4 | SYM+G | 219 | 2fa854dda6330fa766a86149311dc6df | COI_pos3 5 | GTR+I+G | 219 | 9ec99c4f127cf079c19ec1e5cdbc7e2b | COI_pos1 6 | HKY+G | 466 | c95fe90b5f3efc9b623ddcb0a8f27d25 | ITS2 Scheme Description in PartitionFinder format Scheme_start_scheme = (18S) (28S) (COI_pos2) (COI_pos3) (COI_pos1) (ITS2); >>> BI tree in Newick format (Cre_sal_S1916_2:0.001796401,Cre_sal_S1916_1:0.001004566,(Ado_cf_gra_JP008_H1:0.2000397,(((((((Dac_gran_V1:3.211183E-4,Dac_gran_V2:0.001719791):0.01725477,Dac_sel:0.0269665):0.02961737,(Dac_sp_TW_001_01:0.002862667,Dac_sp_TW_001_02:0.005268024):0.03589806):0.02098088,(((Dac_par_FR:9.383648E-4,Dac_par_PL_H1:0.001266737):0.004099326,Dac_par_GB:0.001402624):0.001344727,(Dac_par_V3:4.547939E-4,Dac_par_V7:2.987822E-4):9.181374E-4):0.05687435):0.03208261,Dac_oct_GL_004_04:0.06473549):0.03878029,(Dac_ovi:0.001491316,(Dac_sp_1:3.870804E-4,Dac_sp_2:3.920554E-4):0.003406546):0.04489159):0.05546913,((Mur_cf_pul_IT338:0.05921664,Mur_cf_pullari_V1:0.0651967):0.04896373,(Mur_cf_pullari_US1:0.03745318,(Mur_cf_ste:0.06796295,((Mur_dia:8.86324E-4,Par_mei_A14:3.392039E-4,Par_mei_A4:3.166014E-4):0.002855436,(Par_mei_13:3.065508E-4,Par_mei_A3:3.058753E-4):0.00437192):0.1095305):0.3411676):0.05516495):0.07075813):0.327972):0.2139355);(Cre_sal_S1916_2:0.001796401,Cre_sal_S1916_1:0.001004566,(Ado_cf_gra_JP008_H1:0.2000397,(((((((Dac_gran_V1:3.211183E-4,Dac_gran_V2:0.001719791):0.01725477,Dac_sel:0.0269665):0.02961737,(Dac_sp_TW_001_01:0.002862667,Dac_sp_TW_001_02:0.005268024):0.03589806):0.02098088,(((Dac_par_FR:9.383648E-4,Dac_par_PL_H1:0.001266737):0.004099326,Dac_par_GB:0.001402624):0.001344727,(Dac_par_V3:4.547939E-4,Dac_par_V7:2.987822E-4):9.181374E-4):0.05687435):0.03208261,Dac_oct_GL_004_04:0.06473549):0.03878029,(Dac_ovi:0.001491316,(Dac_sp_1:3.870804E-4,Dac_sp_2:3.920554E-4):0.003406546):0.04489159):0.05546913,((Mur_cf_pul_IT338:0.05921664,Mur_cf_pullari_V1:0.0651967):0.04896373,(Mur_cf_pullari_US1:0.03745318,(Mur_cf_ste:0.06796295,((Mur_dia:8.86324E-4,Par_mei_A14:3.392039E-4,Par_mei_A4:3.166014E-4):0.002855436,(Par_mei_13:3.065508E-4,Par_mei_A3:3.058753E-4):0.00437192):0.1095305):0.3411676):0.05516495):0.07075813):0.327972):0.2139355); #### For ML phylogeny #### >>> ModelFinder Best-fit model according to BIC: TNe+G4:Subset1,K2P+I:Subset2,HKY+F+G4:Subset3,TIM2e+I:Subset4,F81+F+I:Subset5,K2P+G4:Subset6 List of best-fit models per partition: ID Model LogL AIC w-AIC AICc w-AICc BIC w-BIC 1 TNe+G4 -1711.6620 3431.3239 + 0.0000 3431.3724 + 0.0000 3450.2145 + 0.0000 2 K2P+I -1715.9759 3437.9518 + 0.0000 3437.9851 + 0.0000 3451.7103 + 0.0000 3 HKY+F+G4 -2770.9535 5553.9071 + 0.0000 5554.3014 + 0.0000 5574.2688 + 0.0000 4 TIM2e+I -835.4697 1680.9394 + 0.0000 1681.2211 + 0.0000 1697.8848 + 0.0000 5 F81+F+I -415.9070 841.8140 + 0.0000 842.0957 + 0.0000 858.7594 + 0.0000 6 K2P+G4 -2130.1055 4266.2110 + 0.0000 4266.2629 + 0.0000 4278.6435 + 0.0000 AIC, w-AIC : Akaike information criterion scores and weights. AICc, w-AICc : Corrected AIC scores and weights. BIC, w-BIC : Bayesian information criterion scores and weights. Plus signs denote the 95% confidence sets. Minus signs denote significant exclusion. >>> ML tree in newick format: (Ado_cf_gra_JP008_H1:0.1193542801,(Cre_sal_S1916_1:0.0000024638,Cre_sal_S1916_2:0.0022592159)100:0.1372267309,(((((((Dac_gran_V1:0.0000022512,Dac_gran_V2:0.0014936797)100:0.0136729260,Dac_sel:0.0188869480)100:0.0200953564,(Dac_sp_TW_001_01:0.0019634030,Dac_sp_TW_001_02:0.0050691586)100:0.0257162091)96:0.0141393802,(((Dac_par_FR:0.0000027743,Dac_par_PL_H1:0.0016056106)88:0.0036575211,Dac_par_GB:0.0003940611)79:0.0013393044,(Dac_par_V3:0.0000024323,Dac_par_V7:0.0000022512)93:0.0006874517)100:0.0382759952)95:0.0194955173,Dac_oct_GL_004_04:0.0444012446)79:0.0233302171,(Dac_ovi:0.0000021797,(Dac_sp_1:0.0000023145,Dac_sp_2:0.0000023145)91:0.0043753306)70:0.0325229019)67:0.0255467744,((Mur_cf_pul_IT338:0.0402247056,Mur_cf_pullari_V1:0.0423729651)98:0.0295598543,(Mur_cf_pullari_US1:0.0228108486,(Mur_cf_ste:0.0469011472,(((Mur_dia:0.0005431568,Par_mei_A14:0.0000021261)49:0.0000021404,Par_mei_A4:0.0000022512)77:0.0017069854,(Par_mei_13:0.0000022512,Par_mei_A3:0.0000022512)85:0.0033026102)97:0.0699596027)100:0.2068623037)70:0.0355020146)83:0.0410161137)100:0.2010044252);